I separated this section into two parts, one is for the work in Computational Biology, the other is for the work when I worked in Neuroscience.
Lei, H., Gertz, E. M., Schäffer, A. A., Fu, X., Tao, Y., Heselmeyer-Haddad, K., …, and Schwartz, R. (2021).
Tumor heterogeneity assessed by sequencing and fluorescence in situ hybridization (FISH) data.
Bioinformatics, 37(24), 4704-4711
Fu, X., Lei, H., Tao, Y., Heselmeyer-Haddad, K., Li, G., Shi, X., Xu, L., Torres, I., Hou, Y., Wu, K., Dean, M., Ried, T.,
and Schwartz, R. (2021).
Joint clustering of single cell sequencing and fluorescence in situ hybridization data to infer tumor copy number phylogenies.
Journal of Computational Biology, 28(11), 1035-1051
Tao, Y., Lei, H., Fu, X., Lee, A. V., Ma, J., and Schwartz, R. (2020). [pdf]
Robust and accurate deconvolution of tumor populations uncovers evolutionary mechanisms
of breast cancer metastasis.
ISMB2020, Bioinformatics, 36, i407-i416.
Lei, H., Lyu, B., Gertz, E., Schäffer, A., Shi, X., Wu, K., Li, G., Xu, L, Hou, Y., Dean, M., and
Schwartz, R. (2020). [pdf]
Tumor Copy Number Deconvolution Integrating Bulk and Single-Cell
Sequencing Data
RECOMB 2019, Journal of Computational Biology, 27(4) 565-598.
Tao, Y., Lei, H., Lee, A. V., Ma, J., and Schwartz, R. (2020). [pdf]
Neural Network Deconvolution Method for Resolving Pathway-Level Progression of Tumor Clonal Expression Programs
with Application to Breast Cancer Brain Metastases.
Frontiers in Physiology, 11, 1055.
Tao, Y., Lei, H., Lee, A. V., Ma, J., and Schwartz, R. (2019).
Phylogenies derived from matched transcriptome reveal the evolution of cell populations and temporal order of perturbed pathways
in breast cancer brain metastases. In International Symposium on Mathematical and Computational Oncology (pp. 3-28). Springer, Cham.
Lei, H., Gertz, E. M., Schäffer, A. A., Fu, X., Tao, Y., Heselmeyer-Haddad, K., … and Schwartz, R. (2020, July).
Tumor heterogeneity assessed by sequencing and fluorescence in situ hybridization (FISH) data.
Conference on Intelligent System for Molecular Biology (ISMB), virtual
Fu, X., Lei, H., and Schwartz, R. (2020, July)
Joint Clustering of single cell sequencing and fluorescence in situ hybridization data to infer
tumor copy number phylogenies.
ISMB, virtual.
Lei, H., Lyu, B., Gertz, E., Schӓffer, A., Shi, X., Wu, K., Li, G., Xu, L, Hou, Y., Dean, M., and Schwartz, R. (2019, May).
Tumor Copy Number Deconvolution Integrating Bulk and Single-Cell Sequencing Data.
International Conference on Research in Computational Molecular Biology (RECOMB), Washington, DC.
Lei, H., Lyu, B., Gertz, E., Schäffer, A., and Schwartz, R. (2018, October).
Tumor Copy Number Data Deconvolution Integrating Bulk and Single-cell Sequencing Data.
In 2018 IEEE 8th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS), Las Vegas, NV
Lei, H., Roman, T., Eaton, J., and Schwartz, R. (2018, July).
Deconvolution of tumor copy number data using bulk and single-cell sequencing data.
ISMB, Chicago, IL.
Lei, H., Roman, T., Eaton, J., and Schwartz, R. (2018, April).
New directions in deconvolving genomic mixtures of copy number variation data.
SIAM Conference on Discrete Mathematics, Denver, CO.
Li, G., Gong, J., Lei, H., Liu, J., and Xu, X. S. (2016). [pdf]
Promotion of behavior and neuronal function by reactive oxygen species in C. elegans.
Nature communications, 7, 13234
Li, L. B., Lei, H., Arey, R. N., Li, P., Liu, J., Murphy, C. T., Xu, X. S. and Shen, K. (2016). [pdf]
The neuronal kinesin Unc-104/KIF1A is a key regulator of synaptic aging and insulin signaling-regulated memory.
Current Biology, 26(5), 605-615.
Liu, J., Zhang, B., Lei, H., Feng, Z., Liu, J., Hsu, A. L., and Xu, X. S. (2013). [pdf]
Functional aging in the nervous system contributes to age-dependent motor activity decline in C. elegans.
Cell metabolism, 18(3), 392-402